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Home > Computational Methods in Synthetic Biology > Computationally Guided Design of Robust Gene Circuits
Computational Methods in Synthetic Biology |
Mario Andrea Marchisio
Springer New York
Computational Methods in Synthetic Biology
Computationally Guided Design of Robust Gene Circuits
Authors

Najaf A. Shah; Casim A. Sarkar

ARI Id

1664399815817_1519054

Access

Not Available Free

Pages

167-178

DOI

10.1007/978-1-4939-1878-2_8

Chapter URL

https://rd.springer.com/protocol/10.1007/978-1-4939-1878-2_8

Table of Contents of Book
Showing 1 to 20 of 23 entries
Chapters/HeadingsAuthor(s)PagesInfo
Front Matter
i-xi
Front Matter
1-1
Computational Protein Design Methods for Synthetic Biology
Pablo Carbonell; Jean-Yves Trosset
3-21
Computer-Aided Design of DNA Origami Structures
Denis Selnihhin; Ebbe Sloth Andersen
23-44
Computational Design of RNA Parts, Devices, and Transcripts with Kinetic Folding Algorithms Implemented on Multiprocessor Clusters
Tim Thimmaiah; William E. Voje Jr.; James M. Carothers
45-61
Regulatory RNA Design Through Evolutionary Computation and Strand Displacement
William Rostain; Thomas E. Landrain; Guillermo Rodrigo; Alfonso Jaramillo
63-78
Front Matter
79-79
Programming Languages for Circuit Design
Michael Pedersen; Boyan Yordanov
81-104
Kappa Rule-Based Modeling in Synthetic Biology
John Wilson-Kanamori; Vincent Danos; Ty Thomson; Ricardo Honorato-Zimmer
105-135
Modular Design of Synthetic Gene Circuits with Biological Parts and Pools
Mario Andrea Marchisio
137-165
Computationally Guided Design of Robust Gene Circuits
Najaf A. Shah; Casim A. Sarkar
167-178
Chemical Master Equation Closure for Computer-Aided Synthetic Biology
Patrick Smadbeck; Yiannis N. Kaznessis
179-191
Feedback Loops in Biological Networks
Elisa Franco; Kate E. Galloway
193-214
Front Matter
215-215
Efficient Analysis Methods in Synthetic Biology
Curtis Madsen; Chris Myers; Nicholas Roehner; Chris Winstead; Zhen Zhang
217-257
Using Computational Modeling and Experimental Synthetic Perturbations to Probe Biological Circuits
Joshua R. Porter; Eric Batchelor
259-276
In Silico Control of Biomolecular Processes
Jannis Uhlendorf; Agnès Miermont; Thierry Delaveau; Gilles Charvin; François Fages; Samuel Bottani et al.
277-285
Stochastic Modular Analysis for Gene Circuits: Interplay Among Retroactivity, Nonlinearity, and Stochasticity
Kyung Hyuk Kim; Herbert M. Sauro
287-297
Front Matter
299-299
Distributed Model Construction with Virtual Parts
Michael T. Cooling; Tommy Yu
301-322
Chapters/HeadingsAuthor(s)PagesInfo
Showing 1 to 20 of 23 entries
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