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Home > Proteome Bioinformatics > Methods to Calculate Spectrum Similarity
Proteome Bioinformatics |
Shivakumar Keerthikumar; Suresh Mathivanan
Springer New York
Proteome Bioinformatics
Methods to Calculate Spectrum Similarity
Authors

Şule Yilmaz; Elien Vandermarliere; Lennart Martens

ARI Id

1664551929036_2171366

Access

Not Available Free

Pages

75-100

DOI

10.1007/978-1-4939-6740-7_7

Chapter URL

https://rd.springer.com/protocol/10.1007/978-1-4939-6740-7_7

Table of Contents of Book
Showing 1 to 19 of 19 entries
Chapters/HeadingsAuthor(s)PagesInfo
Front Matter
i-xi
An Introduction to Proteome Bioinformatics
Shivakumar Keerthikumar
1-3
Proteomic Data Storage and Sharing
Shivakumar Keerthikumar; Suresh Mathivanan
5-15
Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data
Dhirendra Kumar; Amit Kumar Yadav; Debasis Dash
17-29
Label-Based and Label-Free Strategies for Protein Quantitation
Sushma Anand; Monisha Samuel; Ching-Seng Ang; Shivakumar Keerthikumar; Suresh Mathivanan
31-43
TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform
Mehdi Mirzaei; Dana Pascovici; Jemma X. Wu; Joel Chick; Yunqi Wu; Brett Cooke et al.
45-66
Unassigned MS/MS Spectra: Who Am I?
Mohashin Pathan; Monisha Samuel; Shivakumar Keerthikumar; Suresh Mathivanan
67-74
Methods to Calculate Spectrum Similarity
Şule Yilmaz; Elien Vandermarliere; Lennart Martens
75-100
Proteotypic Peptides and Their Applications
Shivakumar Keerthikumar; Suresh Mathivanan
101-107
Statistical Evaluation of Labeled Comparative Profiling Proteomics Experiments Using Permutation Test
Hien D. Nguyen; Geoffrey J. McLachlan; Michelle M. Hill
109-117
De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data
Mohammad Tawhidul Islam; Abidali Mohamedali; Criselda Santan Fernandes; Mark S. Baker; Shoba Ranganathan
119-134
Phylogenetic Analysis Using Protein Mass Spectrometry
Shiyong Ma; Kevin M. Downard; Jason W. H. Wong
135-146
Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data
Krishna Patel; Manika Singh; Harsha Gowda
147-161
A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes
Mohammad Tawhidul Islam; Abidali Mohamedali; Seong Beom Ahn; Ishmam Nawar; Mark S. Baker; Shoba Ranganathan
163-176
Network Tools for the Analysis of Proteomic Data
David Chisanga; Shivakumar Keerthikumar; Suresh Mathivanan; Naveen Chilamkurti
177-197
Determining the Significance of Protein Network Features and Attributes Using Permutation Testing
Joseph Cursons; Melissa J. Davis
199-208
Bioinformatics Tools and Resources for Analyzing Protein Structures
Jason J. Paxman; Begoña Heras
209-220
In Silico Approach to Identify Potential Inhibitors for Axl-Gas6 Signaling
Swathik Clarancia Peter; Jayakanthan Mannu; Premendu P. Mathur
221-229
Back Matter
231-233
Chapters/HeadingsAuthor(s)PagesInfo
Showing 1 to 19 of 19 entries
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