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Home > Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings > Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings |
Aaron Darling; Jens Stoye
Springer Berlin Heidelberg
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures
Authors

Rolf Backofen; Markus Fricke; Manja Marz; Jing Qin; Peter F. Stadler

ARI Id

1664826144292_3675799

Access

Not Available Free

Pages

112-125

DOI

10.1007/978-3-642-40453-5_10

Chapter URL

https://rd.springer.com/chapter/10.1007/978-3-642-40453-5_10

Table of Contents of Book
Showing 1 to 20 of 30 entries
Chapters/HeadingsAuthor(s)PagesInfo
Front Matter
Extending the Reach of Phylogenetic Inference
Bernard M. E. Moret
1-2
Protein (Multi-)Location Prediction: Using Location Inter-dependencies in a Probabilistic Framework
Ramanuja Simha; Hagit Shatkay
3-17
Towards Reliable Automatic Protein Structure Alignment
Xuefeng Cui; Shuai Cheng Li; Dongbo Bu; Ming Li
18-32
A Minimum-Labeling Approach for Reconstructing Protein Networks across Multiple Conditions
Arnon Mazza; Irit Gat-Viks; Hesso Farhan; Roded Sharan
33-44
Faster Mass Decomposition
Kai Dührkop; Marcus Ludwig; Marvin Meusel; Sebastian Böcker
45-58
On NP-Hardness of the Paired de Bruijn Sound Cycle Problem
Evgeny Kapun; Fedor Tsarev
59-69
Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing
Denisa Duma; Mary Wootters; Anna C. Gilbert; Hung Q. Ngo; Atri Rudra; Matthew Alpert et al.
70-84
A Novel Combinatorial Method for Estimating Transcript Expression with RNA-Seq: Bounding the Number of Paths
Alexandru I. Tomescu; Anna Kuosmanen; Romeo Rizzi; Veli Mäkinen
85-98
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data
Gustavo Sacomoto; Vincent Lacroix; Marie-France Sagot
99-111
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures
Rolf Backofen; Markus Fricke; Manja Marz; Jing Qin; Peter F. Stadler
112-125
Faster Algorithms for RNA-Folding Using the Four-Russians Method
Balaji Venkatachalam; Dan Gusfield; Yelena Frid
126-140
Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree
Jesper Jansson; Chuanqi Shen; Wing-Kin Sung
141-155
The Generalized Robinson-Foulds Metric
Sebastian Böcker; Stefan Canzar; Gunnar W. Klau
156-169
Computing the Skewness of the Phylogenetic Mean Pairwise Distance in Linear Time
Constantinos Tsirogiannis; Brody Sandel
170-184
Characterizing Compatibility and Agreement of Unrooted Trees via Cuts in Graphs
Sudheer Vakati; David Fernández-Baca
185-199
Unifying Parsimonious Tree Reconciliation
Nicolas Wieseke; Matthias Bernt; Martin Middendorf
200-214
Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes
Ilya Minkin; Anand Patel; Mikhail Kolmogorov; Nikolay Vyahhi; Son Pham
215-229
On the Matrix Median Problem
João Paulo Pereira Zanetti; Priscila Biller; João Meidanis
230-243
A Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications
Laurent Bulteau; Guillaume Fertin; Christian Komusiewicz; Irena Rusu
244-258
Chapters/HeadingsAuthor(s)PagesInfo
Showing 1 to 20 of 30 entries
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