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Home > RNA Bioinformatics > Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design
RNA Bioinformatics |
Ernesto Picardi
Springer New York
RNA Bioinformatics
Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design
Authors

Alexander Churkin; Lina Weinbrand; Danny Barash

ARI Id

1665054111757_4634277

Access

Not Available Free

Pages

3-16

DOI

10.1007/978-1-4939-2291-8_1

Chapter URL

https://rd.springer.com/protocol/10.1007/978-1-4939-2291-8_1

Table of Contents of Book
Showing 1 to 20 of 30 entries
Chapters/HeadingsAuthor(s)PagesInfo
Front Matter
i-xii
Front Matter
1-1
Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design
Alexander Churkin; Lina Weinbrand; Danny Barash
3-16
RNA Secondary Structure Prediction from Multi-Aligned Sequences
Michiaki Hamada
17-38
A Simple Protocol for the Inference of RNA Global Pairwise Alignments
Eugenio Mattei; Manuela Helmer-Citterich; Fabrizio Ferrè
39-47
De Novo Secondary Structure Motif Discovery Using RNAProfile
Federico Zambelli; Giulio Pavesi
49-62
Drawing and Editing the Secondary Structure(s) of RNA
Yann Ponty; Fabrice Leclerc
63-100
Modeling and Predicting RNA Three-Dimensional Structures
Jérôme Waldispühl; Vladimir Reinharz
101-121
Fast Prediction of RNA–RNA Interaction Using Heuristic Algorithm
Soheila Montaseri
123-133
Front Matter
135-135
Quality Control of RNA-Seq Experiments
Xing Li; Asha Nair; Shengqin Wang; Liguo Wang
137-146
Accurate Mapping of RNA-Seq Data
Kin Fai Au
147-161
Quantifying Entire Transcriptomes by Aligned RNA-Seq Data
Raffaele A. Calogero; Francesca Zolezzi
163-172
Transcriptome Assembly and Alternative Splicing Analysis
Paola Bonizzoni; Gianluca Della Vedova; Graziano Pesole; Ernesto Picardi; Yuri Pirola; Raffaella Rizzi
173-188
Detection of Post-Transcriptional RNA Editing Events
Ernesto Picardi; Anna Maria D’Erchia; Angela Gallo; Graziano Pesole
189-205
Prediction of miRNA Targets
Anastasis Oulas; Nestoras Karathanasis; Annita Louloupi; Georgios A. Pavlopoulos; Panayiota Poirazi; Kriton Kalantidis et al.
207-229
Using Deep Sequencing Data for Identification of Editing Sites in Mature miRNAs
Shahar Alon; Eli Eisenberg
231-242
NGS-Trex: An Automatic Analysis Workflow for RNA-Seq Data
Ilenia Boria; Lara Boatti; Igor Saggese; Flavio Mignone
243-256
e-DNA Meta-Barcoding: From NGS Raw Data to Taxonomic Profiling
Fosso Bruno; Marzano Marinella; Monica Santamaria
257-278
Deciphering Metatranscriptomic Data
Evguenia Kopylova; Laurent Noé; Corinne Da Silva; Jean-Frédéric Berthelot; Adriana Alberti; Jean-Marc Aury et al.
279-291
Chapters/HeadingsAuthor(s)PagesInfo
Showing 1 to 20 of 30 entries
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