Chapter: A Knowledge Based Decision Support System for Bioinformatics and System Biology

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Chapters/Headings	Author(s)	Pages	Info
Front Matter
Management and Analysis of Protein-to-Protein Interaction Data	Mario Cannataro; Pietro Hiram Guzzi	1-12
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis	R. Giancarlo; G. Lo Bosco; L. Pinello; F. Utro	13-30
De Novo Protein Subcellular Localization Prediction by N-to-1 Neural Networks	Catherine Mooney; Yong-Hong Wang; Gianluca Pollastri	31-43
Osmoprotectants in the Sugarcane (Saccharum spp. ) Transcriptome Revealed by in Silico Evaluation	Petra Barros dos Santos; Nina da Mota Soares-Cavalcanti; Gabriela S. Vieira-de-Melo; Ana Maria Benko-Iseppon	44-58
IP6K Gene Discovery in Plant mtDNA	Fabio Fassetti; Ofelia Leone; Luigi Palopoli; Simona E. Rombo; Adolfo Saiardi	59-71
Identification and Expression of Early Nodulin in Sugarcane Transcriptome Revealed by in Silico Analysis	Gabriela Souto Vieira-de-Mello; Petra Barros dos Santos; Nina da Mota Soares-Cavalcanti; Ana Maria Benko-Iseppon	72-85
An Interactive Method of Anatomical Segmentation and Gene Expression Estimation for an Experimental Mouse Brain Slice	Anton Osokin; Dmitry Vetrov; Alexey Lebedev; Vladimir Galatenko; Dmitry Kropotov; Konstantin Anokhin	86-97
Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods	Castrense Savojardo; Piero Fariselli; Pier Luigi Martelli; Priyank Shukla; Rita Casadio	98-111
Supervised Classification Methods for Mining Cell Differences as Depicted by Raman Spectroscopy	Petros Xanthopoulos; Roberta De Asmundis; Mario Rosario Guarracino; Georgios Pyrgiotakis; Panos M. Pardalos	112-122
Use of Biplots and Partial Least Squares Regression in Microarray Data Analysis for Assessing Association between Genes Involved in Different Biological Pathways	Niccoló Bassani; Federico Ambrogi; Danila Coradini; Elia Biganzoli	123-134
Qualitative Reasoning on Systematic Gene Perturbation Experiments	Francesco Sambo; Barbara Di Camillo	135-146
Biclustering by Resampling	Ekaterina Nosova; Roberto Tagliaferri; Francesco Masulli; Stefano Rovetta	147-158
Labeling Negative Examples in Supervised Learning of New Gene Regulatory Connections	Luigi Cerulo; Vincenzo Paduano; Pietro Zoppoli; Michele Ceccarelli	159-173
MOSCFRA: A Multi-objective Genetic Approach for Simultaneous Clustering and Gene Ranking	Kartick Chandra Mondal; Anirban Mukhopadhyay; Ujjwal Maulik; Sanghamitra Bandhyapadhyay; Nicolas Pasquier	174-187
A Multi-relational Learning Framework to Support Biomedical Applications	Teresa M. A. Basile; Floriana Esposito; Laura Caponetti	188-202
Data Driven Generation of Fuzzy Systems: An Application to Breast Cancer Detection	Antonio d’Acierno; Giuseppe De Pietro; Massimo Esposito	203-214
A Knowledge Based Decision Support System for Bioinformatics and System Biology	Antonino Fiannaca; Salvatore Gaglio; Massimo La Rosa; Daniele Peri; Riccardo Rizzo; Alfonso Urso	215-228
Dynamic Simulations of Pathways Downstream of ERBB-Family: Exploration of Parameter Space and Effects of Its Variation on Network Behavior	Lorenzo Tortolina; Nicoletta Castagnino; Cristina De Ambrosi; Raffaele Pesenti; Franco Patrone; Alberto Ballestrero et al.	229-241
Robustness Analysis of a Linear Dynamical Model of the Drosophila Gene Expression	Alexandre Haye; Jaroslav Albert; Marianne Rooman	242-252
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