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Home > Plant Comparative Genomics > Pangenome Analysis of Plant Transcripts and Coding Sequences
Plant Comparative Genomics |
Alejandro Pereira-Santana; Samuel David Gamboa-Tuz; Luis Carlos Rodríguez-Zapata
Springer US
Plant Comparative Genomics
Pangenome Analysis of Plant Transcripts and Coding Sequences
Authors

Bruno Contreras-Moreira; Álvaro Rodríguez del Río; Carlos P. Cantalapiedra; Rubén Sancho; Pablo Vinuesa

ARI Id

1665397420981_6253162

Access

Not Available Free

Pages

121-152

DOI

10.1007/978-1-0716-2429-6_9

Chapter URL

https://rd.springer.com/protocol/10.1007/978-1-0716-2429-6_9

Table of Contents of Book
Showing 1 to 20 of 22 entries
Chapters/HeadingsAuthor(s)PagesInfo
Front Matter
i-xi
Front Matter
1-1
Orthology Prediction and Phylogenetic Analysis Methods in Plants
Abdoallah Sharaf; Sawsan Elateek
3-22
Species Tree Inference with SNP Data
Michael Matschiner
23-44
High-Throughput Evolutionary Comparative Analysis of Long Intergenic Noncoding RNAs in Multiple Organisms
Anna C. Nelson Dittrich; Andrew D. L. Nelson
45-60
NGS-Indel Coder v2. 0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data
Julien Boutte; Mark Fishbein; Shannon C. K. Straub
61-72
An SGSGeneloss-Based Method for Constructing a Gene Presence–Absence Table Using Mosdepth
Cassandria G. Tay Fernandez; Jacob I. Marsh; Benjamin J. Nestor; Mitchell Gill; Agnieszka A. Golicz; Philipp E. Bayer et al.
73-80
POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes
Yue Hao; Gavin C. Conant
81-91
Front Matter
93-93
Searching for Homologous Genes Using Daisychain
Philipp E. Bayer; David Edwards
95-101
Detecting MicroRNAs in Plant Genomes with miRkwood
Sylvain Legrand; Isabelle Guigon; Hélène Touzet
103-120
Pangenome Analysis of Plant Transcripts and Coding Sequences
Bruno Contreras-Moreira; Álvaro Rodríguez del Río; Carlos P. Cantalapiedra; Rubén Sancho; Pablo Vinuesa
121-152
Metagenomics Bioinformatic Pipeline
Diego Garfias-Gallegos; Claudia Zirión-Martínez; Edder D. Bustos-Díaz; Tania Vanessa Arellano-Fernández; José Abel Lovaco-Flores; Aarón Espinosa-Jaime et al.
153-179
Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach
Victoria Mesa
181-197
Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants
Samuel David Gamboa-Tuz; Alejandro Pereira-Santana; Tao Zhao; M. Eric Schranz
199-215
Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis
Francisco J. Pérez-de los Santos; Jesús Emiliano Sotelo-Fonseca; América Ramírez-Colmenero; Hans-Wilhelm Nützmann; Selene L. Fernandez-Valverde; Katarzyna Oktaba
217-247
Isolation of Boechera stricta Developing Embryos for Hi-C
Mariana Tiscareño-Andrade; Katarzyna Oktaba; Jean-Philippe Vielle-Calzada
249-257
Front Matter
259-259
Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens
Oscar Estrada; Stephen M. Richards; James Breen
261-267
Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-aromatic Rice Germplasms
Debarati Chakraborty
269-279
Chapters/HeadingsAuthor(s)PagesInfo
Showing 1 to 20 of 22 entries
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