"A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data"

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Book	Author(s)	Year	Publisher
Practical Guide to ChIP-seq Data Analysis	Borbala Mifsud; Kathi Zarnack; Anaïs F Bardet	2018	Routledge
RNA-seq Data Analysis: A Practical Approach	Eija Korpelainen; Jarno Tuimala; Panu Somervuo; Mikael Huss; Garry Wong	2014	Routledge
A data motion algorithm.	Allan Gottlieb	1980	Courant Institute of Mathematical Sciences, New York University
A data motion algorithm	Allan Gottlieb	1980	Courant Institute of Mathematical Sciences, New York University
Mobile 3D Graphics SoC: From Algorithm to Chip	Hoi-Jun Yoo; Jeong-Ho Woo; Ju-Ho Sohn; Byeong-Gyu Nam	2010	Wiley-IEEE Press
A linear time algorithm for finding an ambitus.	B. Mishra	1989	Courant Institute of Mathematical Sciences, New York University
An efficient algorithm for finding connected components in a binary image.	Jacob T. Schwartz	1985	Courant Institute of Mathematical Sciences, New York University
An efficient algorithm for finding connected components in a binary image	Jacob T. Schwartz	1985	Courant Institute of Mathematical Sciences, New York University
A decentralized algorithm for finding the shortest paths in defense communications networks	Jin Y. Yen	1979	Naval Postgraduate School
A 3-D data smoothing algorithm	Joseph Bryce Tysver	1981	Naval Postgraduate School
An alternative algorithm for the calculation productivity from remote sensing data	John F. Marra	2003
The combination of a global routing algorithm and a path-finding algorithm for an unmanned moving vehicle	Marvin Hubert Floom	1969	Naval Postgraduate School
A computer algorithm for sorting field data on fuel depths	F. A. Albini	1975	U.S Dept. of Agriculture, Forest Service, Intermountain Forest and Range Experiment Station
Data Structures and Algorithm Analysis in C++	Clifford A. Shaffer	2011	Dover Publications
Data Structures and Algorithm Analysis in C++	Mark A. Weiss	2014	Pearson
Data structures and algorithm analysis in Ada	Mark Allen Weiss	1993	Benjamin/Cummings Pub. Co.
Data structures and algorithm analysis in C++ /	Weiss, Mark Allen.	c2006.	Pearson Addison-Wesley,
Data structures and algorithm analysis in Java /	Weiss, Mark Allen.	c2007.	Peason Addison-Wesley,
Data structures and algorithm analysis in C /	Weiss, Mark Allen.	[1997], ©1997.	Addison-Wesley,
Data structures and algorithm analysis in Java	Mark Allen Weiss	2007	Dorling Kindersley
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Chapter	Author(s)	Book	Book Authors	Year	Publisher
A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data	Federico Zambelli; Giulio Pavesi	Computational Intelligence Methods for Bioinformatics and Biostatistics: 8th International Meeting, CIBB 2011, Gargnano del Garda, Italy, June 30 - July 2, 2011, Revised Selected Papers	Elia Biganzoli; Alfredo Vellido; Federico Ambrogi; Roberto Tagliaferri	2012	Springer Berlin Heidelberg
Motif Finding Algorithms in Biological Sequences	Tarek El Falah; Mourad Elloumi; Thierry Lecroq	Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications	Mourad Elloumi	2011	John Wiley & Sons
ChIP-seq	Edward Curry	Introduction to Bioinformatics with R: A Practical Guide for Biologists	Edward Curry	2020	Routledge
◾ ChIP-Seq Data Analysis	SHUI QING YE, LI QIN ZHANG, AND JIANCHENG TU	Big Data Analysis for Bioinformatics and Biomedical Discoveries	Shui Qing Ye	2016	Routledge
A Faster Algorithm for Finding Disjoint Paths in Grids	Wun-Tat Chan; Francis Y. L. Chin; Hing-Fung Ting	Algorithms and Computations: 10th International Symposium, ISAAC' 99, Chennai, India, December 16-18, 1999 Proceedings	Alok Aggarwal; C. Pandu Rangan	1999	Springer Berlin Heidelberg
Hierarchical Bayesian Models for ChIP-seq Data	Riten Mitra; Peter Müller	Statistical Analysis of Next Generation Sequencing Data	Somnath Datta; Dan Nettleton	2014	Springer International Publishing
Chapter Five - DNA Sequence Motif: A Jack of All Trades for ChIP-Seq Data	Ivan V. Kulakovskiy; Vsevolod J. Makeev	Protein-Nucleic Acids Interactions	Rossen Donev	2013	Academic Press
A Faster Algorithm for Finding Minimum Tucker Submatrices	Guillaume Blin; Romeo Rizzi; Stéphane Vialette	Programs, Proofs, Processes: 6th Conference on Computability in Europe, CiE, 2010, Ponta Delgada, Azores, Portugal, June 30 - July 4, 2010, Proceedings	Fernando Ferreira; Benedikt Löwe; Elvira Mayordomo; Luís Mendes Gomes	2010	Springer Berlin Heidelberg
What does a ChIP-Seq data measure?		The Biostar Handbook: 2nd Edition	Dr. István Albert	0
Chromatin Immunoprecipitation for ChIP-chip and ChIP-seq	Sebastian Schulz; Susanne Häussler	Pseudomonas Methods and Protocols	Alain Filloux; Juan-Luis Ramos	2014	Springer New York
PROJECTION Algorithm for Motif Finding on GPUs	Jhoirene B. Clemente; Francis George C. Cabarle; Henry N. Adorna	Theory and Practice of Computation: Workshop on Computation: Theory and Practice, Quezon City, Philippines, September 2011, Proceedings	Shin-ya Nishizaki; Masayuki Numao; Jaime Caro; Merlin Teodosia Suarez	2012	Springer Japan
ChIP-seq analysis	Altuna Akalin	Computational Genomics with R	Altuna Akalin	2020	Routledge
12. ChIP-seq		Next-generation DNA sequencing informatics /	Brown, Stuart M.,		Cold Spring Harbor Laboratory Press
Modelling ChIP-seq Data Using HMMs	Veronica Vinciotti	Hidden Markov Models: Methods and Protocols	David R. Westhead; M. S. Vijayabaskar	1st ed. 2017	Springer New York
Computational Analysis of ChIP-seq Data	Hongkai Ji	Computational Biology of Transcription Factor Binding	Istvan Ladunga	2010	Humana Press
Deciphering the regulome: from ChIP to ChIP-seq		Molecular Data Analysis Using R	Csaba Ortutay	2017	John Wiley & Sons
Faster Pattern Matching Algorithm for Arc-Annotated Sequences	Takuya Kida	Federation over the Web: International Workshop, Dagstuhl Castle, Germany, May 1-6, 2005, Revised Selected Papers	Klaus P. Jantke; Aran Lunzer; Nicolas Spyratos; Yuzuru Tanaka	2006	Springer Berlin Heidelberg
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences	Sing-Hoi Sze; Xiaoyan Zhao	Systems Biology and Regulatory Genomics: Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005, Revised Selected Papers	Eleazar Eskin; Trey Ideker; Ben Raphael; Christopher Workman	2006	Springer Berlin Heidelberg
Identifying Differential Histone Modification Sites from ChIP‐seq Data	Han Xu; Wing‐Kin Sung	Next Generation Microarray Bioinformatics: Methods and Protocols	Junbai Wang; Aik Choon Tan; Tianhai Tian	2012	Humana Press
Inferring Chromatin Signaling From Genome-Wide ChIP-seq Data	Juliane Perner; Ho-Ryun Chung	Epigenetics and Systems Biology	Leonie Ringrose	2017	Academic Press
Chapter	Author(s)	Book	Book Authors	Year	Publisher

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